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noresm:runmodel:advancednoresm2 [2014-01-27 13:24:14]
alfg created
noresm:runmodel:advancednoresm2 [2022-05-31 09:29:32] (current)
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-===== Advanced configuration of NorESM2 =====+====== Advanced configuration of NorESM2 =====
 + 
 +**NOTE THAT THE COMPSETS MENTIONED IN THIS EXAMPLE ARE NO LONGER MAINTAINED! THE GENERAL EXPLANATION AND IDEAS ARE STILL VALID! 
 +** 
 +===== Creating a new compset ===== 
 + 
 +The essential file to edit is  
 +<file> 
 +~/noresm/scripts/ccsm_utils/Case.template/config_compsets.xml 
 +</file> 
 + 
 +This examples shows how to simply add a to the "F_AMIP_CAM5" compset: 
 + 
 +Under "<!-- F compsets -->", add 
 + 
 +<file> 
 +<COMPSET sname="F_AMIP_CAM5-OSLO"     alias="FAMIPOSLO"  >AMIP_CAM5%OSLO_CLM40%SP_CICE%PRES_DOCN%DOM_RTM_SGLC_SWAV</COMPSET> 
 +</file> 
 + 
 +The "CAM5%OSLO" options have to be defined, so a line like this is needed: 
 + 
 +<file> 
 +<CAM_CONFIG_OPTS compset="_CAM5%OSLO"     >-phys cam5 -cam_oslo aerlife</CAM_CONFIG_OPTS> 
 +</file> 
 + 
 +The compset needs a description, we also need the line 
 +<file> 
 +<desc compset="_CAM5%OSLO">cam 5 physcs and oslo aerosols</desc>  
 +</file> 
 + 
 +We could also define a specific use-case (namelist) for our compset. This would need a line like: 
 +<file> 
 + <CAM_NML_USE_CASE compset="_CAM5%OSLO"        >my_namelist</CAM_NML_USE_CASE> 
 +</file> 
 + 
 +This would only work if the file my_namelist.xml exists as  
 +<file> 
 +noresm/models/atm/cam/bld/namelist_files/use_cases/my_namelist.xml 
 +</file> 
 + 
 + 
 +===== Setting up a case with the new compset and building the model ===== 
 + 
 +It should now be possible to create a new case directory, which we here name FAMIPOSLOtst 
 +and configure with 1 degree horizontal atmospheric resolution; 
 + 
 +<file> 
 +./create_newcase -case ../cases/FAMIPOSLOtst -compset FAMIPOSLO -mach hexagon -res f09_f09 
 +</file> 
 + 
 +and finally set up and compile the model: 
 +<file> 
 +cd ../cases/FAMIPOSLOtst 
 +</file> 
 + 
 +<file> 
 +./cesm_setup 
 +</file> 
 + 
 +<file> 
 +./FAMIPOSLOtst.build 
 +</file> 
 + 
 +===== Why does it work to change config_compsets.xml ?   ===== 
 + 
 +In NorESM there are 3 new config-options for CAM:   
 +  * -cam-oslo aerlife (turns on transport of oslo tracers) 
 +  * -cam-oslo dirind  (also turns on interaction with radiation) 
 +  * -cam-oslo warmclouds (also turns on interaction with warm clouds) 
 + 
 +They change number of tracers and turn on different preprocessor flags in in a perl script called "configure", see:  
 +<file> 
 +models/atm/cam/bld/configure 
 +</file> 
 + 
 +To understand the implementation do: 
 +<file> 
 +svn diff -r 202 models/atm/cam/bld/configure  
 +</file> 
 + 
 +The new oslo-options also need to be defined, see  
 +<file> 
 +models/atm/cam/bld/config_files/definition.xml 
 +</file> 
 + 
 +To see how these new options were added, do: 
 +<file> 
 +svn diff -r 202 models/atm/cam/bld/config_files/definition.xml 
 +</file> 
 + 
 + 
 +===== Configure nudging ===== 
 + 
 +==== Create the met-data ==== 
 + 
 +First run the model to produce 6 hourly data. The following namelists are needed: 
 + 
 +<file> 
 +user_nl_cam 
 +&camexp 
 +mfilt           = 1,  4, 
 +nhtfrq          = 0,  -6, 
 +avgflag_pertape ='A','I', 
 +fincl2          = 'PS','U','V','TAUX','TAUY','FSDS','TS','T','Q','PHIS','QFLX','SHFLX' 
 +</file> 
 + 
 +<file> 
 +user_nl_clm 
 +&clmexp 
 +hist_mfilt             = 1,4 
 +hist_nhtfrq            = 0,-6 
 +hist_avgflag_pertape   = 'A','I' 
 +hist_fincl2            = 'SNOWDP','H2OSNO','H2OSOI' 
 +</file> 
 + 
 +==== Use the met-data in another run ==== 
 + 
 +First create a compset which has the configure-option "-offline_dyn" Check in config_compsets.xml which compsets have this configure-option added. See for example the compset NFAMIPNUDGEPTAERO in https://svn.met.no/NorESM/noresm/branches/featureCAM5-OsloDevelopment_trunk2.0-1/noresm/scripts/ccsm_utils/Case.template/config_compsets.xml 
 + 
 +Then use this compset to create a case. You need the following user-input (for example in your user_nl_cam) 
 + 
 +<file> 
 +&metdata_nl 
 +met_data_file='/work/shared/noresm/inputForNudging/FAMIPC5NudgeOut/atm/hist/FAMIPC5NudgeOut.cam.h1.1979-01-01-00000.nc' 
 +met_filenames_list = '/work/shared/noresm/inputForNudging/FAMIPC5NudgeOut/atm/hist/fileList.txt' 
 +</file> 
 + 
 +This info can be added directly in a use_case which you associate with the compset created (see e.g. 2000_cam5_oslonudge.xml)  
 + 
 +where met_data_file is the first met-data file to read, and met_filenames_list is a list of the following met-data. The first lines of the file should look something like this (guess what the rest of the file should look like? 8-o: )  
 +<file> 
 +/work/shared/noresm/inputForNudging/FAMIPC5NudgeOut/atm/hist/FAMIPC5NudgeOut.cam.h1.1979-01-01-00000.nc 
 +/work/shared/noresm/inputForNudging/FAMIPC5NudgeOut/atm/hist/FAMIPC5NudgeOut.cam.h1.1979-01-02-00000.nc 
 +/work/shared/noresm/inputForNudging/FAMIPC5NudgeOut/atm/hist/FAMIPC5NudgeOut.cam.h1.1979-01-03-00000.nc 
 +</file> 
 + 
 +This file can be created at the place where you put the metdata with this command:  
 +<file> 
 +alfgr@hexagon-4:/work/shared/noresm/inputForNudging/FAMIPC5NudgeOut/atm/hist> ls -d -1 $PWD/*.h1.*.nc > fileList.txt 
 +</file> 
 + 
 +==== Namelist options ==== 
 +When looking at aerosol indirect effects, it's recommended to nudge only U, V and PS: 
 +<file> 
 +&metdata_nl 
 + met_nudge_only_uvps = .true. 
 +</file> 
 + 
 +Choose relaxation time (hours). Use the same time as dt in met_data_file: 
 +<file> 
 +&metdata_nl 
 + met_rlx_time = 6 
 +</file> 
 + 
 + 
 +==== Nudge to ERA-interim reanalysis ==== 
 +Link to ERA-interim metdata instead of model produced metdata. Remember to choose the files corresponding to your resolution (examples below are for f09_f09 and 32 levels in the vertical): 
 +<file> 
 +&metdata_nl 
 + met_data_file = '/work/shared/noresm/inputdata/noresm-only/inputForNudging/ERA_f09f09_30L_days/2001-01-01.nc' 
 + met_filenames_list = '/work/shared/noresm/inputdata/noresm-only/inputForNudging/ERA_f09f09_30L_days/fileList2001-2015.txt' 
 +</file> 
 + 
 +Add also the ERA-topography (no matter which fields you are nudging): 
 +<file> 
 +&cam_inparm 
 + bnd_topo = '/work/shared/noresm/inputdata/noresm-only/inputForNudging/ERA_f09f09_30L_days/ERA_bnd_topo.nc' 
 +</file> 
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