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noresm:modeldiagnostics [2018-02-23 15:33:15] johan.liakka@nersc.no [NorESM Diagnostic Packages] |
noresm:modeldiagnostics [2022-05-31 09:29:32] (current) |
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===== NorESM Diagnostic Packages ===== | ===== NorESM Diagnostic Packages ===== | ||
- | Output from the latest NCAR diagnostic pages can be found on nird here: | ||
- | via the web: | + | **NB: The wiki page for the NorESM diagnostic tools is moved!!** |
- | http:// | + | |
- | via the filesystem on nird here: | + | Last updated: 12-Dec-2020. |
- | / | + | |
+ | Please go to the following NorESM documentation page for the latest description: | ||
+ | https:// | ||
+ | ---- | ||
- | The diagnostics packages are currently available on NIRD. Each package can be run/ | ||
- | |||
- | < | ||
- | ------------------------------------------------- | ||
- | Program: | ||
- | / | ||
- | Version: 3.1 | ||
- | ------------------------------------------------- | ||
- | Short description: | ||
- | diag_run is used to configure and run the NorESM diagnostic packages. | ||
- | |||
- | Basic usage: | ||
- | diag_run -m [model] -c [test case name] -s [test case start yr] -e [test case end yr] # Run model-obs diagnostics | ||
- | diag_run -m [model] -c [test case name] -s [test case start yr] -e [test case end yr] -c2 [cntl case name] -s2 [cntl case start yr] -e2 [cntl case end yr] # Run model1-model2 diagnostics | ||
- | nohup / | ||
- | |||
- | Command-line options: | ||
- | -m, --model=MODEL | ||
- | Valid arguments: | ||
- | cam : atmospheric package (AMWG) | ||
- | clm : land package (LMWG) | ||
- | cice : sea-ice package | ||
- | micom : ocean package | ||
- | all : configure all available packages. | ||
- | -c, -c1, --case=CASE1, | ||
- | -s, -s1, --start_yr=SYR1, | ||
- | -e, -e1, --end_yr=EYR1, | ||
- | -c2, --case2=CASE2 | ||
- | -s2, --start_yr2=SYR2 | ||
- | -e2, --end_yr2=EYR2 | ||
- | -i, -i1, --input-dir=DIR, | ||
- | Default is --input-dir=/ | ||
- | -i2, --input-dir2=DIR | ||
- | Default is --input-dir=/ | ||
- | -o, --output-dir=DIR | ||
- | Default is --output-dir=/ | ||
- | -p, --passive-mode | ||
- | -t, --type=TYPE | ||
- | Default is to run both. Note that the time series are computed over the entire simulation. | ||
- | -w, --web-dir=DIR | ||
- | Default is --web-dir=/ | ||
- | |||
- | Examples: | ||
- | diag_run -m all -c N1850_f19_tn11_exp1 -s 21 -e 50 # model-obs diagnostics of N1850_f19_tn11_exp1 for all (available) components. | ||
- | diag_run -m cam -c N1850_f19_tn11_exp1 -s 21 -e 50 -w / | ||
- | diag_run -m micom -c N1850_f19_tn11_exp1 -s 21 -e 50 # model-obs diagnostics for MICOM | ||
- | diag_run -m cice -c N1850_f19_tn11_exp1 -s 21 -e 50 -p # configure (but do not run) model-obs diagnostics for CICE. | ||
- | diag_run -m clm -c N1850_f19_tn11_exp1 -s 21 -e 50 -i / | ||
- | diag_run -m clm -c N1850_f19_tn11_exp1 -s 21 -e 50 -t climo # model-obs climatology diagnostics (no time series) for CLM: | ||
- | diag_run -m cam -o /my/dir # install CAM diagnostics in /my/dir with minimal configuration. | ||
- | </ | ||
- | Report any problems, comments or suggestions to Johan Liakka: [[mailto: | ||
- | |||
- | === Recent updates === | ||
- | |||
- | * 23.02.18. Update to v3.1: added monthly MLD, seasonal SST/SSS and annual meridional heat/ | ||
- | * 17.01.18. Update to v3.0: the first version of MICOM diagnostics has been included. | ||
- | * 28.11.17. Update to v2.0: included a set of time series plots in CAM diagnostics, | ||
- | |||
- | ===Using diag_run with cron=== | ||
- | If you want to use diag_run with crontab, you first need to load $HOME/ | ||
- | < | ||
- | # | ||
- | # Min Hour Day Month Weekday Command(s) | ||
- | # | ||
- | 50 09 23 11 * . $HOME/ | ||
- | / | ||
- | </ | ||
- | |||
- | |||
- | === Other tips === | ||
- | It is useful to add diag_run as an alias in $HOME/ | ||
- | < | ||
- | alias diag_run='/ | ||
- | </ | ||
- | |||
- | |||
- | === NorESM diagnostics on GitHub === | ||
- | The NorESM diagnostics packages and diag_run are included in the Git version control repository: | ||
- | [[https:// | ||
====== Aerosol and Chemistry, Clouds and Forcing Diagnostics ====== | ====== Aerosol and Chemistry, Clouds and Forcing Diagnostics ====== | ||
Line 269: | Line 189: | ||
http:// | http:// | ||
+ | ====== Post analysis and workup of CAM diagnostics output tables ====== | ||
+ | |||
+ | A tool for post analysis of (multiple) CAM diagnostics ASCII tables can be found in | ||
+ | the following repository: | ||
+ | |||
+ | GitHub https:// | ||
+ | |||
+ | To get started, please follow the instructions in repository README (displayed in repository). Currently, the main | ||
+ | analysis tool is a jupyter IPython notebook called | ||
+ | |||
+ | // | ||
+ | |||
+ | which includes more detailed instructions about setup and options. | ||
+ | |||
+ | Use the notebook | ||
+ | |||
+ | https:// | ||
+ | |||
+ | to download local copies of result tables using a list of URL's. | ||
+ | |||
+ | |||
+ | **Short summary: | ||
+ | The notebook reads multiple diagnostics files (runs) into one long table and creates heatmap plots | ||
+ | of //Bias, RMSE and RMSE relative error// for a subset of variables (rows -> y-axis of heatmap) | ||
+ | vs. the individual runs (columns -> xaxis). | ||
+ | |||
+ | **NOTE:** In the current version, you need to download all tables that you are interested in as csv or | ||
+ | ascii into one directory, that is specified in the header of the notebook. | ||
+ | |||
+ | Variable groups can be defined in this config file: | ||
+ | |||
+ | https:// | ||
+ | |||
+ | **NOTE:** If you add groups to this file in your local copy of the repository, please consider sending | ||
+ | the updated to [[mailto: | ||
+ | remains up to date. | ||
+ | |||
+ | **Troubleshooting** | ||
+ | |||
+ | If you run into problems, please raise an issue in the repository or contact [[mailto: |