noresm:modeldiagnostics

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noresm:modeldiagnostics [2017-11-23 20:15:53]
johan.liakka@nersc.no [NorESM Diagnostic Packages] 		noresm:modeldiagnostics [2022-05-31 09:29:32] (current)
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 ====== Model Diagnostic Tools====== ====== Model Diagnostic Tools======
  
-This page links to tools used for NorESM model evaluation.+This page links to tools used for the NorESM model evaluation.
  
 ===== NorESM Diagnostic Packages ===== ===== NorESM Diagnostic Packages =====
  
-The diagnostics packages are currently available on NIRD. Each package can be run/configured from the command line using the program diag_run: 
  
-<file> +**NB: The wiki page for the NorESM diagnostic tools is moved!!**
-------------------------------------------------- +
-Program: +
-/projects/NS2345K/noresm_diagnostics/bin/diag_run +
-Version: 171123 +
-------------------------------------------------- +
-Short description: +
-diag_run is used to configure and run the NorESM diagnostic packages. +
-  +
-Basic usage: +
-diag_run -m [model] -c [test case name] -s [test case start yr] -e [test case end yr] # Run model-obs diagnostics +
-diag_run -m [model] -c [test case name] -s [test case start yr] -e [test case end yr] -c2 [cntl case name] -s2 [cntl case start yr] -e2 [cntl case end yr] # Run model1-model2 diagnostics +
-nohup /projects/NS2345K/noresm_diagnostics/bin/diag_run -m [model] -c [test case name] -s [test case start yr] -e [test case end yr] &> out & # Run model-obs diagnostics in the background with nohup +
-  +
-Command-line options: +
--m, --model=MODEL                             Specify the diagnostics package (REQUIRED). +
-                                              Valid arguments: +
-                                                cam  : atmospheric package (AMWG) +
-                                                clm  : land package (LMWG) +
-                                                cice : sea-ice package +
-                                                all  : configure all available packages (currently cam, clm and cice; micom and pop are still in development). +
--c, -c1, --case=CASE1, --case1=CASE1          Test case simulation (OPTIONAL). +
--s, -s1, --start_yr=SYR1, --start_yr1=SYR1    Start year of test case climatology (OPTIONAL). +
--e, -e1, --end_yr=EYR1, --end_yr1=EYR1        End year of test case climatology (OPTIONAL). +
--c2, --case2=CASE2                            Control case simulation (OPTIONAL). +
--s2, --start_yr2=SYR2                         Start year of control case climatology (OPTIONAL). +
--e2, --end_yr2=EYR2                           End year of control case climatology (OPTIONAL). +
--i, -i1, --input-dir=DIR, --input-dir1=DIR    Specify the directory where the test case history files are located (OPTIONAL). +
-                                              Default is --input-dir=/projects/NS2345K/noresm/cases +
--i2, --input-dir2=DIR                         Specify the directory where the control case history files are located (OPTIONAL). +
-                                              Default is --input-dir=/projects/NS2345K/noresm/cases +
--o, --output-dir=DIR                          Specify the directory where the package(s) should be installed (OPTIONAL). +
-                                              Default is --output-dir=/scratch/johiak/noresm_diagnostics +
--p, --passive-mode                            Run the script in passive mode: the diagnostic script will be configured but not executed (OPTIONAL). +
--t, --type=TYPE                               Specify climatology or time series diagnostics (OPTIONAL): valid options are --type=climo and --type=time_series. +
-                                              Default is to run both. Note that the time series are computed over the entire simulation. +
--w, --web-dir=DIR                             Specify the directory where the html should be published (OPTIONAL). +
-                                              Default is --web-dir=/projects/NS2345K/www/noresm_diagnostics +
-  +
-Examples: +
-diag_run -m all -c N1850_f19_tn11_exp1 -s 21 -e 50 # model-obs diagnostics of N1850_f19_tn11_exp1 for all (available) components. +
-diag_run -m cam -c N1850_f19_tn11_exp1 -s 21 -e 50 -w /path/to/my/html # model-obs diagnostics for CAM, publish the html in /path/to/my/html. +
-diag_run -m cice -c N1850_f19_tn11_exp1 -s 21 -e 50 -p # configure (but do not run) model-obs diagnostics for CICE. +
-diag_run -m clm -c N1850_f19_tn11_exp1 -s 21 -e 50 -i /input/directory1 -c2 N1850_f19_tn11_exp2 -s2 21 -e2 50 -i2 /input/directory2 # model1-model2 diagnostics for CLM with user-specified history file directories +
-diag_run -m clm -c N1850_f19_tn11_exp1 -s 21 -e 50 -t climo # model-obs climatology diagnostics (no time series) for CLM: +
-diag_run -m cam -o /my/dir # install CAM diagnostics in /my/dir with minimal configuration. +
-</file> +
-Report any problems, comments or suggestions to Johan Liakka: [[mailto:johan.liakka@nersc.no|johan.liakka@nersc.no]] +
- +
- +
-===== MICOM Diagnostic Package ===== +
- +
- (NEW 2015.04.23)  +
-First version of MICOM diagnostic package is available on grunch/norstore/hexagon/vilje. Please find more details  {{:noresm:detelinaivanova_noresm_diagnostics_rg1_032515.pdf|here}}. +
- +
-===== SVN Repository for NorESM Diagnostic Packages  ===== +
- +
-(NEW 2015.04.23)+
  
-The NorESM Diagnostic Packages can be downloaded via svn using the command:  +Last updated: 12-Dec-2020.
-  svn export svn://noresg.norstore.no/NoresmDiagnosticPackages+
  
 +Please go to the following NorESM documentation page for the latest description:
  
 +https://noresm-docs.readthedocs.io/en/latest/diagnostics/diagnostics.html
 +----
  
-A web-viewer is available at [[https://webserver1.norstore.uio.no:8443/websvn/wsvn/NORESG-diagpacks]] (user: guestuser, passw: friendly). 
  
 ====== Aerosol and Chemistry, Clouds and Forcing Diagnostics ====== ====== Aerosol and Chemistry, Clouds and Forcing Diagnostics ======
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 http://www.jasmin.ac.uk/services/jasmin-analysis-platform/ http://www.jasmin.ac.uk/services/jasmin-analysis-platform/
  
 +====== Post analysis and workup of CAM diagnostics output tables ======
 +
 +A tool for post analysis of (multiple) CAM diagnostics ASCII tables can be found in 
 +the following repository:
 +
 +GitHub https://github.com/jgliss/noresm_diag_postproc
 +
 +To get started, please follow the instructions in repository README (displayed in repository). Currently, the main 
 +analysis tool is a jupyter IPython notebook called 
 +
 +//**analysis_tool.ipynb**// (https://github.com/jgliss/noresm_diag_postproc/blob/master/analysis_tool.ipynb)
 +
 +which includes more detailed instructions about setup and options. 
 +
 +Use the notebook 
 +
 +https://github.com/jgliss/noresm_diag_postproc/blob/master/download_tables.ipynb
 +
 +to download local copies of result tables using a list of URL's.
 +
 +
 +**Short summary:** 
 +The notebook reads multiple diagnostics files (runs) into one long table and creates heatmap plots
 +of //Bias, RMSE and RMSE relative error// for a subset of variables (rows -> y-axis of heatmap) 
 +vs. the individual runs (columns -> xaxis). 
 +
 +**NOTE:** In the current version, you need to download all tables that you are interested in as csv or 
 +ascii into one directory, that is specified in the header of the notebook.
 +
 +Variable groups can be defined in this config file:
 +
 +https://github.com/jgliss/noresm_diag_postproc/blob/master/config/var_groups.ini
 +
 +**NOTE:** If you add groups to this file in your local copy of the repository, please consider sending
 +the updated to [[mailto:jonasg@met.no|jonasg@met.no]] or to submit a pull request, so that the remote repository 
 +remains up to date.
 +
 +**Troubleshooting**
  
 +If you run into problems, please raise an issue in the repository or contact [[mailto:jonasg@met.no|jonasg@met.no]]
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