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noresm:modeldiagnostics [2018-02-23 15:33:15] johan.liakka@nersc.no [NorESM Diagnostic Packages] |
noresm:modeldiagnostics [2018-08-20 18:02:38] yanchun.he@nersc.no |
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Program: | Program: | ||
/ | / | ||
- | Version: | + | Version: |
------------------------------------------------- | ------------------------------------------------- | ||
Short description: | Short description: | ||
- | diag_run is used to configure and run the NorESM diagnostic packages. | + | A wrapper script for NorESM diagnostic packages. |
Basic usage: | Basic usage: | ||
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-m, --model=MODEL | -m, --model=MODEL | ||
Valid arguments: | Valid arguments: | ||
- | cam | + | cam : atmospheric package (AMWG) |
- | clm | + | clm : land package (LMWG) |
- | cice : sea-ice package | + | cice |
- | micom : ocean package | + | micom : ocean package |
- | all | + | hamocc : biogeochemistry |
+ | all : configure all available packages. | ||
-c, -c1, --case=CASE1, | -c, -c1, --case=CASE1, | ||
-s, -s1, --start_yr=SYR1, | -s, -s1, --start_yr=SYR1, | ||
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Default is --input-dir=/ | Default is --input-dir=/ | ||
-o, --output-dir=DIR | -o, --output-dir=DIR | ||
- | Default is --output-dir=/ | + | Default is --output-dir=/ |
-p, --passive-mode | -p, --passive-mode | ||
-t, --type=TYPE | -t, --type=TYPE | ||
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-w, --web-dir=DIR | -w, --web-dir=DIR | ||
Default is --web-dir=/ | Default is --web-dir=/ | ||
+ | --no-atm | ||
Examples: | Examples: | ||
- | diag_run -m all -c N1850_f19_tn11_exp1 -s 21 -e 50 # model-obs diagnostics of N1850_f19_tn11_exp1 | + | diag_run -m all -c N1850_f19_tn11_exp1 -s 21 -e 50 # model-obs diagnostics of case=N1850_f19_tn11_exp1 (climatology between yrs 21 and 50) for all model components. |
- | diag_run -m cam -c N1850_f19_tn11_exp1 -s 21 -e 50 -w / | + | diag_run -m cam -c N1850_f19_tn11_exp1 -s 21 -e 50 -w / |
- | diag_run -m micom -c N1850_f19_tn11_exp1 -s 21 -e 50 # model-obs diagnostics | + | diag_run -m micom -c N1850_f19_tn11_exp1 -t time_series |
diag_run -m cice -c N1850_f19_tn11_exp1 -s 21 -e 50 -p # configure (but do not run) model-obs diagnostics for CICE. | diag_run -m cice -c N1850_f19_tn11_exp1 -s 21 -e 50 -p # configure (but do not run) model-obs diagnostics for CICE. | ||
diag_run -m clm -c N1850_f19_tn11_exp1 -s 21 -e 50 -i / | diag_run -m clm -c N1850_f19_tn11_exp1 -s 21 -e 50 -i / | ||
- | diag_run -m clm -c N1850_f19_tn11_exp1 -s 21 -e 50 -t climo # model-obs climatology diagnostics (no time series) for CLM: | + | diag_run -m micom -c N1850_f19_tn11_exp1 -s 21 -e 50 -t climo # model-obs climatology diagnostics (no time series) for MICOM: |
diag_run -m cam -o /my/dir # install CAM diagnostics in /my/dir with minimal configuration. | diag_run -m cam -o /my/dir # install CAM diagnostics in /my/dir with minimal configuration. | ||
+ | diag_run -m micom, | ||
+ | diag_run -m clm -c N1850_f19_tn11_clmexp1 -s 71 -e 100 --no-atm # model-obs time-series diagnostics for an offline (uncoupled) CLM simulation. | ||
+ | diag_run -m hamocc -c N1850OC_f19_tn11_exp1 -s 31 -e 100 -t time_series # model-obs time-series diagnostics in HAMOCC between yrs 31 and 100. | ||
</ | </ | ||
- | Report any problems, comments or suggestions to Johan Liakka: [[mailto:johan.liakka@nersc.no|johan.liakka@nersc.no]] | + | A comprehensive technical summary of diag_run (pdf): {{ :noresm: |
- | === Recent updates === | + | Report any problems, comments or suggestions to Yanchun He: [[mailto: |
+ | === Recent updates === | ||
+ | * 29.08.10. Update to v5.1: update NCO/NCL versions to support efficient process of compressed netcdf-4 files. | ||
+ | * 29.06.18. Update to v5.0: new fields to HAMOCC and MICOM diagnostics; | ||
+ | * 20.04.18. Update to v4.3: added new fields to HAMOCC diagnostics. | ||
+ | * 19.04.18. Update to v4.2: included ability to do time-series diagnostics between two user-specified years. | ||
+ | * 18.04.18. Update to v4.1: improved climatology and time-series calculations in CLM, and introduction of the --no-atm option to enable diagnostics for offline CLM simulations. | ||
+ | * 09.04.18. Update to v4.0: included the HAMOCC diagnostics package. | ||
* 23.02.18. Update to v3.1: added monthly MLD, seasonal SST/SSS and annual meridional heat/ | * 23.02.18. Update to v3.1: added monthly MLD, seasonal SST/SSS and annual meridional heat/ | ||
* 17.01.18. Update to v3.0: the first version of MICOM diagnostics has been included. | * 17.01.18. Update to v3.0: the first version of MICOM diagnostics has been included. | ||
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# | # | ||
50 09 23 11 * . $HOME/ | 50 09 23 11 * . $HOME/ | ||
- | / | + | / |
</ | </ | ||
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The NorESM diagnostics packages and diag_run are included in the Git version control repository: | The NorESM diagnostics packages and diag_run are included in the Git version control repository: | ||
[[https:// | [[https:// | ||
- | |||
====== Aerosol and Chemistry, Clouds and Forcing Diagnostics ====== | ====== Aerosol and Chemistry, Clouds and Forcing Diagnostics ====== | ||
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JASMIN | JASMIN | ||
http:// | http:// | ||
+ | |||
+ | ====== Post analysis and workup of CAM diagnostics output tables ====== | ||
+ | |||
+ | A tool for post analysis of (multiple) CAM diagnostics ASCII tables can be found in | ||
+ | the following repository: | ||
+ | |||
+ | GitHub https:// | ||
+ | |||
+ | To get started, please follow the instructions in repository README (displayed in repository). Currently, the main | ||
+ | analysis tool is a jupyter IPython notebook called | ||
+ | |||
+ | // | ||
+ | |||
+ | which includes more detailed instructions about setup and options. | ||
+ | |||
+ | Use the notebook | ||
+ | |||
+ | https:// | ||
+ | |||
+ | to download local copies of result tables using a list of URL's. | ||
+ | |||
+ | |||
+ | **Short summary: | ||
+ | The notebook reads multiple diagnostics files (runs) into one long table and creates heatmap plots | ||
+ | of //Bias, RMSE and RMSE relative error// for a subset of variables (rows -> y-axis of heatmap) | ||
+ | vs. the individual runs (columns -> xaxis). | ||
+ | |||
+ | **NOTE:** In the current version, you need to download all tables that you are interested in as csv or | ||
+ | ascii into one directory, that is specified in the header of the notebook. | ||
+ | |||
+ | Variable groups can be defined in this config file: | ||
+ | |||
+ | https:// | ||
+ | |||
+ | **NOTE:** If you add groups to this file in your local copy of the repository, please consider sending | ||
+ | the updated to [[mailto: | ||
+ | remains up to date. | ||
+ | |||
+ | **Troubleshooting** | ||
+ | |||
+ | If you run into problems, please raise an issue in the repository or contact [[mailto: | ||