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noresm:modeldiagnostics [2017-11-28 10:05:01] johan.liakka@nersc.no [NorESM Diagnostic Packages] |
noresm:modeldiagnostics [2020-12-22 12:44:09] yanchun.he@nersc.no [NorESM Diagnostic Packages] |
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====== Model Diagnostic Tools====== | ====== Model Diagnostic Tools====== | ||
- | This page links to tools used for NorESM model evaluation. | + | This page links to tools used for the NorESM model evaluation. |
===== NorESM Diagnostic Packages ===== | ===== NorESM Diagnostic Packages ===== | ||
+ | |||
+ | Output from the latest NCAR diagnostic pages can be found on nird here: | ||
+ | |||
+ | via the web: | ||
+ | http:// | ||
+ | |||
+ | via the filesystem on nird here: | ||
+ | / | ||
+ | |||
+ | **NB: The following wiki page for the NorESM diagnostic tools is moved!!** | ||
+ | |||
+ | Last updated: 12-Dec-2020. | ||
+ | |||
+ | Please go to the following NorESM documentation page for the latest description: | ||
+ | |||
+ | https:// | ||
+ | ---- | ||
+ | |||
The diagnostics packages are currently available on NIRD. Each package can be run/ | The diagnostics packages are currently available on NIRD. Each package can be run/ | ||
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------------------------------------------------- | ------------------------------------------------- | ||
Program: | Program: | ||
- | / | + | / |
- | Version: 2.0 | + | Version: 2.1 |
------------------------------------------------- | ------------------------------------------------- | ||
Short description: | Short description: | ||
- | diag_run is used to configure and run the NorESM diagnostic packages. | + | A wrapper script for NorESM diagnostic packages. |
- | + | ||
Basic usage: | Basic usage: | ||
diag_run -m [model] -c [test case name] -s [test case start yr] -e [test case end yr] # Run model-obs diagnostics | diag_run -m [model] -c [test case name] -s [test case start yr] -e [test case end yr] # Run model-obs diagnostics | ||
diag_run -m [model] -c [test case name] -s [test case start yr] -e [test case end yr] -c2 [cntl case name] -s2 [cntl case start yr] -e2 [cntl case end yr] # Run model1-model2 diagnostics | diag_run -m [model] -c [test case name] -s [test case start yr] -e [test case end yr] -c2 [cntl case name] -s2 [cntl case start yr] -e2 [cntl case end yr] # Run model1-model2 diagnostics | ||
- | nohup / | + | nohup / |
- | + | ||
Command-line options: | Command-line options: | ||
-m, --model=MODEL | -m, --model=MODEL | ||
Valid arguments: | Valid arguments: | ||
- | cam : atmospheric package (AMWG) | + | cam : atmospheric package (AMWG) |
- | clm : land package (LMWG) | + | clm : land package (LMWG) |
- | cice : sea-ice package | + | cice |
- | all : configure all available packages | + | blom : ocean package |
+ | hamocc : biogeochemistry | ||
+ | all : configure all available packages. | ||
-c, -c1, --case=CASE1, | -c, -c1, --case=CASE1, | ||
-s, -s1, --start_yr=SYR1, | -s, -s1, --start_yr=SYR1, | ||
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-i2, --input-dir2=DIR | -i2, --input-dir2=DIR | ||
Default is --input-dir=/ | Default is --input-dir=/ | ||
- | -o, --output-dir=DIR | + | -o, --output-dir=DIR |
- | Default is --output-dir=/ | + | Default is --output-dir=/ |
-p, --passive-mode | -p, --passive-mode | ||
-t, --type=TYPE | -t, --type=TYPE | ||
Default is to run both. Note that the time series are computed over the entire simulation. | Default is to run both. Note that the time series are computed over the entire simulation. | ||
-w, --web-dir=DIR | -w, --web-dir=DIR | ||
- | Default is --web-dir=/ | + | Default is --web-dir=/ |
- | + | --no-atm | |
Examples: | Examples: | ||
- | diag_run -m all -c N1850_f19_tn11_exp1 -s 21 -e 50 # model-obs diagnostics of N1850_f19_tn11_exp1 | + | diag_run -m all -c N1850_f19_tn11_exp1 -s 21 -e 50 # model-obs diagnostics of case=N1850_f19_tn11_exp1 (climatology between yrs 21 and 50) for all model components. |
- | diag_run -m cam -c N1850_f19_tn11_exp1 -s 21 -e 50 -w / | + | diag_run -m cam -c N1850_f19_tn11_exp1 -s 21 -e 50 -w / |
+ | diag_run -m blom -c N1850_f19_tn11_exp1 -t time_series # model-obs time-series diagnostics in BLOM for all years represented in the model output directory (/ | ||
diag_run -m cice -c N1850_f19_tn11_exp1 -s 21 -e 50 -p # configure (but do not run) model-obs diagnostics for CICE. | diag_run -m cice -c N1850_f19_tn11_exp1 -s 21 -e 50 -p # configure (but do not run) model-obs diagnostics for CICE. | ||
diag_run -m clm -c N1850_f19_tn11_exp1 -s 21 -e 50 -i / | diag_run -m clm -c N1850_f19_tn11_exp1 -s 21 -e 50 -i / | ||
- | diag_run -m clm -c N1850_f19_tn11_exp1 -s 21 -e 50 -t climo # model-obs climatology diagnostics (no time series) for CLM: | + | diag_run -m blom -c N1850_f19_tn11_exp1 -s 21 -e 50 -t climo # model-obs climatology diagnostics (no time series) for BLOM: |
diag_run -m cam -o /my/dir # install CAM diagnostics in /my/dir with minimal configuration. | diag_run -m cam -o /my/dir # install CAM diagnostics in /my/dir with minimal configuration. | ||
+ | diag_run -m blom,hamocc -c N1850OC_f19_tn11_exp1 -s 21 -e 50 # model-obs diagnostics for BLOM and HAMOCC. | ||
+ | diag_run -m clm -c N1850_f19_tn11_clmexp1 -s 71 -e 100 --no-atm # model-obs time-series diagnostics for an offline (uncoupled) CLM simulation. | ||
+ | diag_run -m hamocc -c N1850OC_f19_tn11_exp1 -s 31 -e 100 -t time_series # model-obs time-series diagnostics in HAMOCC between yrs 31 and 100. | ||
+ | |||
+ | *** NOTE: '-m micom' should be used for the ocean component of NorESM version 1 *** | ||
</ | </ | ||
- | Report any problems, comments or suggestions to Johan Liakka: [[mailto:johan.liakka@nersc.no|johan.liakka@nersc.no]] | + | A comprehensive technical summary of diag_run (pdf): {{ :noresm: |
- | === Recent changes === | + | Report any problems, comments or suggestions |
- | * 28.11.17. Update | + | |
- | + | ||
- | === Update to NCL version 6.4.0 === | + | |
- | The diagnostics packages have been configured and developed using NCL version 6.4.0 (the most recent version on NIRD as of 23.11.2017). The user is strongly recommended to use this version, as some bugs have been reported for older versions. To update NCL, add the following two lines of code to your $HOME/ | + | |
- | < | + | |
- | export NCARG_ROOT=/ | + | |
- | export PATH=/ | + | |
- | </ | + | |
+ | === Recent updates === | ||
+ | * 08.08.19. Note: NS2345K is recovered now, please use the normal / | ||
+ | * 08.08.19. Update to v6.0: add support to TS-derived mlts, global averages: tempga, | ||
+ | * 29.08.18. Update to v5.1: update NCO/NCL versions to support efficient process of compressed netcdf-4 files. | ||
+ | * 29.06.18. Update to v5.0: new fields to HAMOCC and MICOM diagnostics; | ||
+ | * 20.04.18. Update to v4.3: added new fields to HAMOCC diagnostics. | ||
+ | * 19.04.18. Update to v4.2: included ability to do time-series diagnostics between two user-specified years. | ||
+ | * 18.04.18. Update to v4.1: improved climatology and time-series calculations in CLM, and introduction of the --no-atm option to enable diagnostics for offline CLM simulations. | ||
+ | * 09.04.18. Update to v4.0: included the HAMOCC diagnostics package. | ||
+ | * 23.02.18. Update to v3.1: added monthly MLD, seasonal SST/SSS and annual meridional heat/ | ||
+ | * 17.01.18. Update to v3.0: the first version of MICOM diagnostics has been included. | ||
+ | * 28.11.17. Update to v2.0: included a set of time series plots in CAM diagnostics, | ||
===Using diag_run with cron=== | ===Using diag_run with cron=== | ||
- | If you want to use diag_run with crontab, you first need to load $HOME/ | + | If you want to use diag_run with crontab, you first need to load $HOME/ |
< | < | ||
# | # | ||
# Min Hour Day Month Weekday Command(s) | # Min Hour Day Month Weekday Command(s) | ||
# | # | ||
- | 50 09 23 11 * . $HOME/ | + | 50 09 23 11 * . $HOME/ |
- | / | + | / |
</ | </ | ||
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It is useful to add diag_run as an alias in $HOME/ | It is useful to add diag_run as an alias in $HOME/ | ||
< | < | ||
- | alias diag_run='/ | + | alias diag_run='/ |
</ | </ | ||
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=== NorESM diagnostics on GitHub === | === NorESM diagnostics on GitHub === | ||
The NorESM diagnostics packages and diag_run are included in the Git version control repository: | The NorESM diagnostics packages and diag_run are included in the Git version control repository: | ||
- | [[https:// | + | [[https:// |
====== Aerosol and Chemistry, Clouds and Forcing Diagnostics ====== | ====== Aerosol and Chemistry, Clouds and Forcing Diagnostics ====== | ||
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http:// | http:// | ||
+ | ====== Post analysis and workup of CAM diagnostics output tables ====== | ||
+ | |||
+ | A tool for post analysis of (multiple) CAM diagnostics ASCII tables can be found in | ||
+ | the following repository: | ||
+ | |||
+ | GitHub https:// | ||
+ | |||
+ | To get started, please follow the instructions in repository README (displayed in repository). Currently, the main | ||
+ | analysis tool is a jupyter IPython notebook called | ||
+ | |||
+ | // | ||
+ | |||
+ | which includes more detailed instructions about setup and options. | ||
+ | |||
+ | Use the notebook | ||
+ | |||
+ | https:// | ||
+ | |||
+ | to download local copies of result tables using a list of URL's. | ||
+ | |||
+ | |||
+ | **Short summary: | ||
+ | The notebook reads multiple diagnostics files (runs) into one long table and creates heatmap plots | ||
+ | of //Bias, RMSE and RMSE relative error// for a subset of variables (rows -> y-axis of heatmap) | ||
+ | vs. the individual runs (columns -> xaxis). | ||
+ | |||
+ | **NOTE:** In the current version, you need to download all tables that you are interested in as csv or | ||
+ | ascii into one directory, that is specified in the header of the notebook. | ||
+ | |||
+ | Variable groups can be defined in this config file: | ||
+ | |||
+ | https:// | ||
+ | |||
+ | **NOTE:** If you add groups to this file in your local copy of the repository, please consider sending | ||
+ | the updated to [[mailto: | ||
+ | remains up to date. | ||
+ | |||
+ | **Troubleshooting** | ||
+ | If you run into problems, please raise an issue in the repository or contact [[mailto: |