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noresm:modeldiagnostics [2015-12-17 11:47:38] michaels [Model Diagnostic Tools] |
noresm:modeldiagnostics [2020-12-22 12:44:09] yanchun.he@nersc.no [NorESM Diagnostic Packages] |
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====== Model Diagnostic Tools====== | ====== Model Diagnostic Tools====== | ||
- | This page links to tools used for NorESM model evaluation. | + | This page links to tools used for the NorESM model evaluation. |
- | For comparison to older model simulations use the list of available simulations and runs, to be found => | ||
===== NorESM Diagnostic Packages ===== | ===== NorESM Diagnostic Packages ===== | ||
- | Please, refer to GUIDE_ReadME_first and the ReadME files in each of the Model Components Diagnostic Tools (Packages) locations below for more details. | + | Output from the latest NCAR diagnostic pages can be found on nird here: |
- | < | + | via the web: |
- | Usage: nohup [your work directory path]/[amwg/ice_diag]_template.csh >& out & | + | http://ns2345k.web.sigma2.no/ |
- | Purpose: Model solution validation, evaluation, and analysis | + | via the filesystem on nird here: |
- | compared to observations and reference model simulation. | + | / |
- | Description: Automated diagnostic packages | + | **NB: The following wiki page for the NorESM |
- | based on the NCAR CESM diagnostics packages. | + | |
- | | + | |
- | The packages are installed and stored in 4 locations; please use them on Cruncher or Grunch when possible: | + | Last updated: 12-Dec-2020. |
- | On cruncher.uio.no/ | + | Please go to the following NorESM documentation page for the latest description: |
- | /projects/NS2345K/ | + | https://noresm-docs.readthedocs.io/ |
+ | ---- | ||
- | On grunch.bccs.uib.no/ | ||
- | / | + | The diagnostics |
- | On vilje.hpc.ntnu.no in: | + | < |
+ | ------------------------------------------------- | ||
+ | Program: | ||
+ | / | ||
+ | Version: 2.1 | ||
+ | ------------------------------------------------- | ||
+ | Short description: | ||
+ | A wrapper script for NorESM diagnostic packages. | ||
- | /work/shared/noresm/diagnostics/Packages | + | Basic usage: |
+ | diag_run -m [model] -c [test case name] -s [test case start yr] -e [test case end yr] # Run model-obs diagnostics | ||
+ | diag_run -m [model] -c [test case name] -s [test case start yr] -e [test case end yr] -c2 [cntl case name] -s2 [cntl case start yr] -e2 [cntl case end yr] # Run model1-model2 diagnostics | ||
+ | nohup /projects/NS2345K/ | ||
- | There are 6 diagnostic tools CAM_DIAG | + | Command-line options: |
- | POP_DIAG | + | -m, --model=MODEL |
+ | Valid arguments: | ||
+ | cam : atmospheric package (AMWG) | ||
+ | clm : land package (LMWG) | ||
+ | cice : sea-ice package | ||
+ | blom : ocean package | ||
+ | hamocc : biogeochemistry package | ||
+ | all : configure all available packages. | ||
+ | -c, -c1, --case=CASE1, --case1=CASE1 | ||
+ | -s, -s1, --start_yr=SYR1, --start_yr1=SYR1 | ||
+ | -e, -e1, --end_yr=EYR1, | ||
+ | -c2, --case2=CASE2 | ||
+ | -s2, --start_yr2=SYR2 | ||
+ | -e2, --end_yr2=EYR2 | ||
+ | -i, -i1, --input-dir=DIR, | ||
+ | Default is --input-dir=/ | ||
+ | -i2, --input-dir2=DIR | ||
+ | Default is --input-dir=/ | ||
+ | -o, --output-dir=DIR | ||
+ | Default is --output-dir=/ | ||
+ | -p, --passive-mode | ||
+ | -t, --type=TYPE | ||
+ | Default is to run both. Note that the time series are computed over the entire simulation. | ||
+ | -w, --web-dir=DIR | ||
+ | Default is --web-dir=/ | ||
+ | --no-atm | ||
- | Currently only the CAM (AMWG) and the CICE packages are ported and ready to use. | + | Examples: |
- | You will find for each of those c-shell macroscript *_template.csh.[machine] | + | diag_run -m all -c N1850_f19_tn11_exp1 -s 21 -e 50 # model-obs diagnostics of case=N1850_f19_tn11_exp1 |
- | Copy it in your working directory, change the paths and file names in the user-defined part of it and run. | + | diag_run -m cam -c N1850_f19_tn11_exp1 -s 21 -e 50 -w / |
+ | diag_run -m blom -c N1850_f19_tn11_exp1 -t time_series # model-obs time-series diagnostics in BLOM for all years represented in the model output directory (/ | ||
+ | diag_run -m cice -c N1850_f19_tn11_exp1 | ||
+ | diag_run -m clm -c N1850_f19_tn11_exp1 -s 21 -e 50 -i / | ||
+ | diag_run -m blom -c N1850_f19_tn11_exp1 -s 21 -e 50 -t climo # model-obs climatology diagnostics (no time series) for BLOM: | ||
+ | diag_run -m cam -o /my/dir # install CAM diagnostics | ||
+ | diag_run -m blom,hamocc -c N1850OC_f19_tn11_exp1 -s 21 -e 50 # model-obs diagnostics for BLOM and HAMOCC. | ||
+ | diag_run | ||
+ | diag_run -m hamocc -c N1850OC_f19_tn11_exp1 -s 31 -e 100 -t time_series # model-obs time-series diagnostics in HAMOCC between yrs 31 and 100. | ||
+ | *** NOTE: '-m micom' should be used for the ocean component of NorESM version 1 *** | ||
</ | </ | ||
- | Report any problems or suggestions to Detelina Ivanova: [[mailto:detelina.ivanova@nersc.no|detelina.ivanova@nersc.no]] | + | A comprehensive technical summary of diag_run (pdf): {{ :noresm: |
+ | Report any problems, comments or suggestions to Yanchun He: [[mailto: | ||
- | ===== MICOM Diagnostic Package ===== | + | === Recent updates |
+ | * 08.08.19. Note: NS2345K is recovered now, please use the normal / | ||
+ | * 08.08.19. Update to v6.0: add support to TS-derived mlts, global averages: tempga, | ||
+ | * 29.08.18. Update to v5.1: update NCO/NCL versions to support efficient process of compressed netcdf-4 files. | ||
+ | * 29.06.18. Update to v5.0: new fields to HAMOCC and MICOM diagnostics; | ||
+ | * 20.04.18. Update to v4.3: added new fields to HAMOCC diagnostics. | ||
+ | * 19.04.18. Update to v4.2: included ability to do time-series diagnostics between two user-specified years. | ||
+ | * 18.04.18. Update to v4.1: improved climatology and time-series calculations in CLM, and introduction of the --no-atm option to enable diagnostics for offline CLM simulations. | ||
+ | * 09.04.18. Update to v4.0: included the HAMOCC diagnostics package. | ||
+ | * 23.02.18. Update to v3.1: added monthly MLD, seasonal SST/SSS and annual meridional heat/ | ||
+ | * 17.01.18. Update to v3.0: the first version of MICOM diagnostics has been included. | ||
+ | * 28.11.17. Update to v2.0: included a set of time series plots in CAM diagnostics, | ||
- | (NEW 2015.04.23) | + | ===Using diag_run with cron=== |
- | First version of MICOM diagnostic package is available on grunch/norstore/hexagon/vilje. Please find more details | + | If you want to use diag_run with crontab, you first need to load $HOME/.bash_profile, |
+ | < | ||
+ | # | ||
+ | # Min Hour Day Month Weekday Command(s) | ||
+ | # | ||
+ | 50 09 23 11 * . $HOME/.bash_profile; | ||
+ | / | ||
+ | </ | ||
- | ===== SVN Repository for NorESM Diagnostic Packages | ||
- | (NEW 2015.04.23) | + | === Other tips === |
+ | It is useful to add diag_run as an alias in $HOME/.bashrc, so that you do not need to write out the whole path every time you run it: | ||
+ | < | ||
+ | alias diag_run='/ | ||
+ | </ | ||
- | The NorESM Diagnostic Packages can be downloaded via svn using the command: | ||
- | svn export svn:// | ||
- | |||
- | |||
- | |||
- | A web-viewer is available at [[https:// | ||
+ | === NorESM diagnostics on GitHub === | ||
+ | The NorESM diagnostics packages and diag_run are included in the Git version control repository: | ||
+ | [[https:// | ||
====== Aerosol and Chemistry, Clouds and Forcing Diagnostics ====== | ====== Aerosol and Chemistry, Clouds and Forcing Diagnostics ====== | ||
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* Example: ftp:// | * Example: ftp:// | ||
+ | ===== Cloud water mass and number analysis (budgets) ====== | ||
+ | |||
+ | |||
+ | ===Configuring a run with more cloud diagnostics in NorESM2 === | ||
+ | |||
+ | To switch on extra output for cloud diagnostics (mass and number tendencies for liquid water and mass) change the following namelist variable: | ||
+ | |||
+ | < | ||
+ | & | ||
+ | history_budget = .true. | ||
+ | / | ||
+ | </ | ||
+ | |||
+ | A python script for plotting the mass and number budgets for the cloud microphysics can be found under: | ||
+ | |||
+ | models/ | ||
+ | |||
+ | in the same branch. Copy the script to your local computer or lustre and edit the script to read the correct input file(s) (instructions inside the script). Run the script by typing: | ||
+ | |||
+ | < | ||
+ | python scriptname.py | ||
+ | </ | ||
+ | |||
+ | in your terminal. | ||
===== Automatic AEROCOM analysis ===== | ===== Automatic AEROCOM analysis ===== | ||
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< | < | ||
- | of the form NorESM-CAM5_svn{RevisionNumber}_YYMMDD{initials}_Freetext. \\ | + | in the required format |
- | Example: " | + | **NorESM-CAM5_svn{RevisionNumber}_YYMMDD{initials}_Freetext**. \\ |
+ | |||
+ | Example: | ||
+ | "**NorESM-CAM5_svn1094_151201AG_CMIP6endelig**" \\ | ||
Initials AG: Alf Grini, AK: Alf Kirkevåg, DO: Dirk Olivie... | Initials AG: Alf Grini, AK: Alf Kirkevåg, DO: Dirk Olivie... | ||
+ | |||
+ | Where the date YYMMDD corresponds to the time when the AeroCom data preparation script has been executed. | ||
The script creates files named like | The script creates files named like | ||
Line 203: | Line 292: | ||
http:// | http:// | ||
+ | ====== Post analysis and workup of CAM diagnostics output tables ====== | ||
+ | |||
+ | A tool for post analysis of (multiple) CAM diagnostics ASCII tables can be found in | ||
+ | the following repository: | ||
+ | |||
+ | GitHub https:// | ||
+ | |||
+ | To get started, please follow the instructions in repository README (displayed in repository). Currently, the main | ||
+ | analysis tool is a jupyter IPython notebook called | ||
+ | |||
+ | // | ||
+ | |||
+ | which includes more detailed instructions about setup and options. | ||
+ | |||
+ | Use the notebook | ||
+ | |||
+ | https:// | ||
+ | |||
+ | to download local copies of result tables using a list of URL's. | ||
+ | |||
+ | |||
+ | **Short summary: | ||
+ | The notebook reads multiple diagnostics files (runs) into one long table and creates heatmap plots | ||
+ | of //Bias, RMSE and RMSE relative error// for a subset of variables (rows -> y-axis of heatmap) | ||
+ | vs. the individual runs (columns -> xaxis). | ||
+ | |||
+ | **NOTE:** In the current version, you need to download all tables that you are interested in as csv or | ||
+ | ascii into one directory, that is specified in the header of the notebook. | ||
+ | |||
+ | Variable groups can be defined in this config file: | ||
+ | |||
+ | https:// | ||
+ | |||
+ | **NOTE:** If you add groups to this file in your local copy of the repository, please consider sending | ||
+ | the updated to [[mailto: | ||
+ | remains up to date. | ||
+ | |||
+ | **Troubleshooting** | ||
+ | If you run into problems, please raise an issue in the repository or contact [[mailto: |