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--- noresm:settingupcamonlinuxpc [2014-03-05 12:13:12]
alfg [Configure your case]
+++ noresm:settingupcamonlinuxpc [2022-05-31 09:29:32] (current)
@@ Line 15: / Line 15: @@
 **To use the development version of CAM5-Oslo, check out NorESM (not CESM) from the noresm repository**
 <file>
-svn checkout https://svn.met.no/NorESM/noresm/branches/featureCAM5-OsloDevelopment_trunk2.0-1 myCamOsloDev
+svn checkout https://svn.met.no/NorESM/noresm/branches/featureCAM5-OsloDevelopment_trunk2.0-4 myCamOsloDev
 </file>
 ===== Compile the netcdf libraries using gfortran =====
@@ Line 51: / Line 51: @@
   * export CXXFLAGS=-O0
-The netcdf c-library complains about a non-successful compilation because it can not find Doxyfile. This is not important.
+The netcdf c-library complains about a non-successful compilation because it can not find Doxyfile. This is not important. The compilation needs also the following env-variables: CPPFLAGS=-I${dir}/include, LDFLAGS=-L${dir}/lib, where "dir" is directory you use for the "configure" scripts
 ) Get the netcdf source code (including the c-headers) from
@@ Line 59: / Line 59: @@
 c) make install
-) Get fortran netcdf api (http://www.unidata.ucar.edu/downloads/netcdf/netcdf-fortran/index.jsp) and follow
+) Get fortran netcdf api (http://www.unidata.ucar.edu/downloads/netcdf/index.jsp) and follow
 http://www.unidata.ucar.edu/software/netcdf/docs/netcdf-fortran-install.html
@@ Line 81: / Line 81: @@
   * export CSMDATA=/path/to/cam/input/data
-This command compiles CAM (not including any CAM-Oslo code) on my machine
+This command configures CAM (not including any CAM-Oslo code) on my machine. It creates a Makefile used later for compilation.
 <file>
@@ Line 87: / Line 87: @@
 </file>
-As long as $camcfg is defined, you can execute this from any directory..
+**As long as $camcfg is defined, you can execute this from any directory..**
-Then you need the following commands
+Then you need the following commands **executed from the same directory as you executed "configure"**
 <file>
 $camcfg/build-namelist -test -config config_cache.xml
@@ Line 112: / Line 112: @@
 <file>
 ./cam
+</file>
+NOTE: In CAM5.5 (upcoming versions) this same procedure is supposed to work with the following command (NOT VERIFIED):
+<file>
+$camcfg/configure -fc gfortran -fc_type gnu -debug -nospmd -nosmp -dyn fv -res 10x15 -ice sice -phys cam5
 </file>
@@ Line 118: / Line 124: @@
 This assumes you checked out NorESM (and CESM) with subversion
-**In order to include CAM-Oslo code you need to change the config-options: (go back to the configure-step in the section above)**
+Works with latest version of oslo aerosol development branch
 <file>
- $camcfg/configure -dyn fv -debug -hgrid 10x15 -fc gfortran -nospmd -nosmp -test -fc_type gnu -cam_oslo aerlife -cam_oslo_pc true
+ $camcfg/configure -dyn fv -debug -hgrid 10x15 -fc gfortran -nospmd -nosmp -test -fc_type gnu -chem trop_mam_oslo
 </file>
 There are additional input needed for the CAM-Oslo code. They are available in the same input-directory as the normal CESM-input files.
@@ Line 139: / Line 146: @@
 gdb has problems with printing info about allocatable arrays. Allocatable arrays have to be displayed as "*((real_8 *)my_array + N)@M" where N is number of elements beyond first element and M is number of elements to show. (See bottom of this page (and links therein) http://stackoverflow.com/questions/11786958/how-to-print-fortran-arrays-in-gdb)
+It is sometimes useful to let the compiler tell you about additional errors. Assuming you use gfortran on your PC: See https://gcc.gnu.org/onlinedocs/gfortran/Code-Gen-Options.html for additional options. For example if you want to check just about everything, add "-fcheck=all" to the "FC_FLAGS" in the gfortran section. (Note: Running configure again re-generates the Makefile)